5' ATGCGTACGTTAGCAGGTTACGTAACG TAA 3'
chr7: 55,086,724–55,087,112 • ACGTACGTACGTACGT • depth≈42×
RNA: AUGGCUUACGGAUCUAAGGCUA • (fold?)
FASTA>pankaj_demo ATGGAGTCTGATGCTGATGAC…
k-mer(31): GATTACAGATTACA…

Pankaj Bhattarai

Ph.D. student in Computer Science @ Florida State University • computational biology / bioinformatics • ML for biomedical data

GPA: 4.00/4.00 (current) Role: GRA + TA
First-year Ph.D. student in Computer Science with a strong background in machine learning and a growing research focus on computational biology and bioinformatics. Experienced in developing data-driven models for biomedical applications, working with large-scale datasets, and conducting research in collaborative, interdisciplinary environments.
Location: Tallahassee, FL 32304

About

I'm a first-year Ph.D. student in Computer Science at Florida State University. My research direction is centered on computational biology and bioinformatics, with an emphasis on machine learning methods for biomedical data.

Current goals: build strong baselines, learn the biology behind the data, and produce reproducible results.

"Make it reproducible."  →  versions + seeds + scripts + logs
"Measure everything."    →  baselines + ablations + honest metrics
"Respect the biology."   →  assumptions + confounders + validation
Go to Publications →

Education

Florida State University
Fall 2025 — Present
Ph.D. in Computer Science • Tallahassee, FL
GPA: 4.00 / 4.00 (current) • Focus: Computational Biology and Bioinformatics
SRM Institute of Science and Technology
2020 — 2024
B.Tech in Computer Science and Engineering • Chennai, India
CGPA: 9.53 / 10

Research

Graduate Research Assistant (GRA) • Florida State University • Fall 2025 — Present

  • Conducting research in computational biology and bioinformatics using machine learning approaches.
  • Designing and evaluating models for biomedical data analysis and disease detection.
  • Working with large datasets on Linux-based HPC clusters (batch scheduling, reproducible workflows).
  • Building preprocessing + training + validation pipelines in Python (NumPy/Pandas, scikit-learn, PyTorch).
  • Documenting experiments (configs, seeds, ablations) to support reproducibility.

Teaching

Graduate Teaching Assistant (TA) • Florida State University • Fall 2025 — Present

Courses TA'd
  • CGS2060Computer Fluency (Term: Spring 2026, Fall 2025)
  • CGS2100Microcomputer Applications for Business/Economics (Term: Spring 2026, Fall 2025)
Responsibilities
TA
  • Conducting office hours to support students with problem solving.
  • Providing feedbacks on grading based on consistent rubrics.
  • Helping solve projects, explain concepts, and keep course logistics running smoothly.

Relevant Coursework

Florida State University (PhD)
Fall 2025 — Present
  • COT5507 — Analytic Methods for Computer Science
  • CAP5540 — Bioinformatics - Sequence Analysis
  • COT5405 — Advanced Algorithms
  • CAP5638 — Pattern Recognition
SRMIST (B.Tech)
2020 — 2024
  • 18CSC305J — Artifical Intelligence
  • 18NTO403T — Scientific Research Principles
  • 18GEO104T — Computational Genomics
  • 18CSC201J — Data Structures and Algorithms
  • 18ECO108J — Embedded System Design

Publications

Detection of Pneumonia Using Machine Learning
Pankaj Bhattarai; K. A. Varun Kumar; Balachandar T; Rashmi Od • ACM ICIMMI 2023

Patents

AI Based Plant Extract Analysing Device to Identify Disease
Design No. 392971-001 • Granted by the Patent Office, Government of India

Talks & Presentations

Detection of Pneumonia using Machine Learning
Dec 2023
5th International Conference on Information Management & Machine Intelligence (ICIMMI 2023)

Selected Projects

These can be rewritten into stronger, results-style bullets once details are available.

  • Detection of Cyber Attacks on Internet Connected Vehicles — security analytics and anomaly detection.
  • Plant Disease Detection System — AI-based classification workflow.
  • AI Chatbot using NLP — NLP + ML pipeline experimentation.
  • Face-based Authentication System — applied computer vision prototype.
  • C Header for Vector Manipulation — low-level data structure utilities.

Skills

Skills

Python C/C++ ML: scikit-learn, PyTorch Data: NumPy, Pandas Scientific computing HPC: Linux clusters, batch scheduling Reproducibility: Git, LaTeX Databases: SQL/NoSQL Web dev & hosting
FASTA>demo
ATGCGTACGTTAGCAGGTTACGTAACGTAA

read_001  ATGCGTACGTTAGCA--GTTACGTA
ref       ATGCGTACGTTAGCAGGGTTACGTA

Honors & Awards

Winning Team — SRM Smart Campus Hackathon
2023
Compex Scholarship — Government of India
2020

Contact

Best way to reach me is email.

Location: Tallahassee, FL 32304
Collaboration: if you're working on bioinformatics / computational biology, I’m happy to chat.